The University of Sheffield

CARD-RGI Perfect & Strict Hits

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PhD Thesis Additional Data: CARD-RGI Perfect & Strict Hits

posted on 2022-02-23, 20:33 authored by Lucy Urwin, Peter N. Monk
Supplementary data from the PhD thesis, 'The Development of in vitro Corneal Infection Models for Antimicrobial Drug Testing' (Lucy Urwin, 2022, Dept. IICD).

Chapter 4 of the thesis describes characterisation of clinical isolates, including 39 Pseudomonas aeruginosa isolates from LV Prasad Eye Institute, Hyderabad, India. Genome sequencing was performed by Microbes NG (LVP3-6), Dr Luke Green, University of Sheffield (LVP3-6) and Dr Naveen Kumar, Christian Medical College, Vellore (all other isolates).

FASTA files were analysed using the Comprehensive Antibiotic Resistance Database Resistance Gene Identifier (CARD-RGI). This file contains details of perfect and strict hits for antibiotic resistance genes, as identified by CARD-RGI.

See README file for more details.


Adhesion to host cell membrane microdomains in cornea as an antimicrobial target to prevent corneal ulceration

Medical Research Council

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    Department of Infection, Immunity & Cardiovascular Disease