CARD-RGI Perfect & Strict Hits
Reason: Data requires access restrictions as these findings have not yet been published. The data has been uploaded to provide access to PhD viva examiners. To request access, please email lurwin2@sheffield.ac.uk or p.monk@sheffield.ac.uk
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PhD Thesis Additional Data: CARD-RGI Perfect & Strict Hits
dataset
posted on 2022-02-23, 20:33 authored by Lucy Urwin, Peter N. MonkSupplementary data from the PhD thesis, 'The Development of in vitro Corneal Infection Models for Antimicrobial Drug Testing' (Lucy Urwin, 2022, Dept. IICD).
Chapter 4 of the thesis describes characterisation of clinical isolates, including 39 Pseudomonas aeruginosa isolates from LV Prasad Eye Institute, Hyderabad, India. Genome sequencing was performed by Microbes NG (LVP3-6), Dr Luke Green, University of Sheffield (LVP3-6) and Dr Naveen Kumar, Christian Medical College, Vellore (all other isolates).
FASTA files were analysed using the Comprehensive Antibiotic Resistance Database Resistance Gene Identifier (CARD-RGI). This file contains details of perfect and strict hits for antibiotic resistance genes, as identified by CARD-RGI.
See README file for more details.
Funding
Adhesion to host cell membrane microdomains in cornea as an antimicrobial target to prevent corneal ulceration
Medical Research Council
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