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pgfinder - Peptidoglycan analysis

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pgfinder is a Python package that automates the  analysis pipeline of data from Liquid Chromatography Mass Spectrometry comparing deconvoluted masses to a database of theoretical monoisotopic masses. These candidate monomers form the basis of theoretical dimer and trimer masses which are in turn matched against possible candidates after determining possible modifications.

Funding

White Rose Doctoral Training Partnership in Mechanistic Biology and its Strategic Application

Biotechnology and Biological Sciences Research Council

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Analysis of the L,D transpeptidation pathway in Clostridium difficile: contribution to peptidoglycan synthesis and antibiotic resistance

Medical Research Council

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History

Ethics

There is no personal data or any that requires ethical approval

Policy

The data complies with the institution and funders' policies on access and sharing

Sharing and access restrictions

The data can be shared openly

Data description

  • The file formats are open or commonly used

Methodology, headings and units

  • Headings and units are explained in the files
  • There is a file including methodology, headings and units, such as a readme.txt